Creative Commons License
The works (text and image) by Leonardo de Oliveira Martins originally presented here are licensed under a Creative Commons Attribution-Share Alike 3.0 Unported License. In a nutshell, you are free to share, copy and modify his works  - including for commercial purposes - as long as you accredit him where credit is due and any derived works preserve this license.

GPL license
The softwares should be licensed under the GNU General Public License, but please verify within the source code for details.

News

This is a crude blogging system for google sites (where this site is hosted) without many capabilities, so I give preference to write on the software and the methods blogs. I will leave here only notes essential for using the site.
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Poster live at F1000 Poster Bank

posted Jul 16, 2010 9:20 AM by Leonardo de Oliveira Martins

Now the poster presented at SMBE 2010 is also available at the F1000 Poster Bank.

Poster presented at SMBE2010 available for download

posted Jul 12, 2010 3:42 PM by Leonardo de Oliveira Martins

I uploaded the poster presented at SMBE2010 about biomc2 and wrote some commentaries on it at this blog post. The poster is under the Creative Commons License.

The file server is down

posted Jul 2, 2010 5:44 AM by Leonardo de Oliveira Martins

The web server gorilla.uvigo.es is down, for now I've put the files on https://corn.ab.a.u-tokyo.ac.jp which uses a self-signed certificate (so most browsers will complain when accessing for the first time).

Actually the server is not accessible since last year, but I forgot to update this "News" page. I guess it's more reliable to follow the software blog at blogspot...

New article describing the "penalty function"

posted Jul 2, 2010 5:37 AM by Leonardo de Oliveira Martins

Leonardo de Oliveira Martins and Hirohisa Kishino (2010) Distribution of distances between topologies and its effect on detection of phylogenetic recombination. Annals of the Institute of Statistical Mathematics 62(1): 145--159. doi:10.1007/s10463-009-0259-8

I wrote some more info at this blog post.

version 1.9 available

posted Jun 15, 2009 7:23 PM by Leonardo de Oliveira Martins   [ updated Jun 15, 2009 7:26 PM ]

The source code and binaries for AMD (linux) and Intel (Mac OSX) of the software biomc2 version 1.9 are already available for download.

biomc2 software

posted Jun 14, 2009 7:18 PM by Leonardo de Oliveira Martins   [ updated Jun 14, 2009 7:29 PM ]

The source code, binaries and datasets from software biomc2, which were being hosted at corn.ab.a.u-tokyo.ac.jp/~leo/biomc2 are now physically at gorilla.uvigo.es/~leo/biomc2, but should now be accessed from here. I will use www.biomcmc.org as the "static" homepage for the softwares - more stable, linkable - such that the user doesn't need to bother where the files are at least for the next seven years (when the domain expires...) 

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